# flye

**Repository Path**: AntsCodeCommunity/flye

## Basic Information

- **Project Name**: flye
- **Description**: Flye is a de novo assembler for single-molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
Currently, Flye will produce collapsed assemblies of diploid genomes, represented by a single mosaic haplotype. To recover two phased haplotypes consider applying HapDup after the assembly.
- **Primary Language**: Unknown
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 1
- **Created**: 2022-09-06
- **Last Updated**: 2022-09-06

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# flye

#### Description
Flye is a de novo assembler for single-molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
Currently, Flye will produce collapsed assemblies of diploid genomes, represented by a single mosaic haplotype. To recover two phased haplotypes consider applying HapDup after the assembly.

#### Software Architecture
Software architecture description

#### Installation

1.  xxxx
2.  xxxx
3.  xxxx

#### Instructions

1.  xxxx
2.  xxxx
3.  xxxx

#### Contribution

1.  Fork the repository
2.  Create Feat_xxx branch
3.  Commit your code
4.  Create Pull Request


#### Gitee Feature

1.  You can use Readme\_XXX.md to support different languages, such as Readme\_en.md, Readme\_zh.md
2.  Gitee blog [blog.gitee.com](https://blog.gitee.com)
3.  Explore open source project [https://gitee.com/explore](https://gitee.com/explore)
4.  The most valuable open source project [GVP](https://gitee.com/gvp)
5.  The manual of Gitee [https://gitee.com/help](https://gitee.com/help)
6.  The most popular members  [https://gitee.com/gitee-stars/](https://gitee.com/gitee-stars/)